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Publications

Last modified Nov 27, 2013

2014

Last modified May 08, 2014

Daducci, A., E. Canales-Rodriguez, M. Descoteaux, E. Garyfallidis, Y. Gur, Y-C. Lin, M. Mani, S. Merlet, M. Paquette, A. Ramirez-Manzanares, M. Reisert, P. Rodrigues, F. Sepehrband, E. Caruyer, J. Choupan, R. Deriche, M. Jacob, G. Menegaz, V. Prckovska, M. Rivera, Y. Wiaux, and J-P. Thiran. "Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI." Transactions in Medical Imaging, 33 (2): 384-399, 2014. URL

D. De Nigris, D. L. Collins and T. Arbel, "SymBA: Diffeomorphic Registration Based on Gradient Orientation Alignment and Boundary Proximity of Sparsely Selected Voxels", accepted to the 6th International Workshop on Biomedical Image Registration (WBIR) , July 2014. (oral presentation)

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. "Dipy, a library for the analysis of diffusion MRI data." Frontiers in Neuroinformatics, 1-18, 2014. URL

Garyfallidis, E., D. Wassermann, and M. Descoteaux. "Direct native-space fiber bundle alignment for group comparisons." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Milan, Italy. 7796, 2014. (Abstract)

Garyfallidis, E., M. Zuchelli, J-C. Houde, and M. Descoteaux. "How to perform best ODF reconstruction from the Human Connectome Project sampling scheme?" Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). Milan, Italy. 6838, 2014. (Abstract)

Garyfallidis, E., A. Rokem, B. Amirbekian, S. van der Walt, M. Zucchelli, J-O. Ocegueda-Gonzalez, S. St-Jean, G. Girard, M. Paquette, I. Nimmo-Smith, M. Brett, and M. Descoteaux. "The new methods available in Dipy 0.7.0+ that you should know about." Proceeding of: Organization of Human Brain Mapping (OHBM). Hamburg, Germany, 2014. (Abstract)

Paquette, M., S. Merlet, G. Gilbert, R. Deriche, and M. Descoteaux. "A comparison of sampling strategies and sparsifying transforms to improve Compressed Sensing DSI." Magnetic Resonance in Medicine, in press, 2014. URL

Paquette, M., S. Merlet, R. Deriche, and M. Descoteaux. "DSI 101: Better ODFs for free!" Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). 7018, 2014. (Abstract)

St-Jean, S., P. Coupé, and M. Descoteaux. "Non Local Spatial and Angular Matching : a new denoising technique for diffusion MRI." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). 758, 2014.

Zuchelli, M., E. Garyfallidis, M. Paquette, S. Merlet, G. Menegaz, and M. Descoteaux. "Comparison between discrete and continuous propagator indices from Cartesian q-space DSI sampling." Proceeding of: International Society of Magnetic Resonance in Medicine (ISMRM). 6762, 2014. (Abstract)

2013

Last modified Nov 27, 2013

Côté, M-A., G. Girard, A. Boré, E. Garyfallidis, J-C. Houde, and M. Descoteaux. Tractometer: Towards Validation of Tractography Pipelines. Medical Image Analysis, 17 (7): 844-857, 2013.

De Nigris D., Collins D. L., Arbel T., Fast Rigid Registration of Pre-Operative Magnetic Resonance Images to Intra-Operative Ultrasound for Neurosurgery based on High Confidence Gradient Orientations. International Journal of Computer Assisted Radiology and Surgery, Feb. 2013.

E. Piuze, H. Lombaert, J. Sporring & K. Siddiqi. Cardiac Fiber Inpainting using Cartan Forms. MICCAI 2, volume 8150 of Lecture Notes in Computer Science, page 509-517. Springer, (2013).

E. Piuze, H. Lombaert, J. Sporring, G. Strijkers, A. Bakermans & K.Siddiqi. Atlases of Cardiac Fiber Differential Structure. Functional Imaging and Modeling of the Heart, Lecture Notes in Computer Science Volume 7945, 2013, pp 442-449. (Oral presentation).

E. Piuze, J. Sporring & K. Siddiqi. Moving Frames for Heart Fiber Geometry. Information Processing in Medical Imaging, Lecture Notes in Computer Science Volume 7917, 2013, pp 524-535.

Garyfallidis E., St-Jean S., Paquette M., Coupé P., Descoteaux M. “Constrained spherical deconvolution on signal and odf values” Proceedings of IEEE International Symposium on Biomedical Imaging 2013, HARDI reconstruction workshop.

Garyfallidis E., Paquette, M., St-Jean. S., Coupé P., Descoteaux M., “Deconvolution enhanced Generalized Q-Sampling 2 and DSI deconvolution” Proceedings of IEEE International Symposium on Biomedical Imaging 2013, HARDI reconstruction workshop.

Merlet S., Paquette M., Deriche R., Descoteaux M., Compressive Sensing DSI. Proceedings of IEEE International Symposium on Biomedical Imaging 2013, HARDI reconstruction workshop.

Paquette M., Garyfallidis E., St-Jean S., Coupé P.  Descoteaux M., Particle Swarm Optimization in Multi-Tensor Imaging. Proceedings of IEEE International Symposium on Biomedical Imaging 2013, HARDI reconstruction workshop.

Paquette, M. and M. Descoteaux. A Separable Approximation to DSI Deconvolution. Proceedings of: International Society of Magnetic Resonance in Medicine (ISMRM). 2121, 2013.

Sotero R.C., Bortel A., Naaman S., Bakhtiari S., Kropf P., Shmuel A. (2013) Laminar distribution of cross-frequency coupling during spontaneous activity in rat area S1FI. 43rd Annual Meeting of the Society for Neuroscience, 2013.

Bakhtiari S.. Predictive coding and orientation selectivity in visual cortex. CREATE-MIA Summer School, June, 2013. (Oral presentation)

De Nigris D., Registration of Pre-operative MR to Intra-operative US for Image Guided Neurosurgery, CREATE-MIA Summer School, June, 2013. (Oral presentation).

Descoteaux M., Garyfallidis E., Paquette M., St-Jean S. dMRI Mini-course, CREATE-MIA Summer School, June 2013. (Workshop)

Garyfallidis E., Clustering streamlines generated from dMRI datasets, CREATE-MIA Summer School, June, 2013. (Oral presentation).

Ghaderi H., MRI Acquisition and Analysis Methods for Image-guided Deep Brain Neurosurgery: Target Localization and Decision Making Platform for Pre-operative Planning. CREATE-MIA Summer School, June, 2013. (Oral Presentation).

Gueziri H.E.. Surface reconstruction in 3D freehand ultrasound with modeling and visualization of uncertainty. CREATE-MIA Summer, June, 2013. (Oral presentation)

Movaghati S.. Imaging the spatiotemporal cortical response to motion in the visual field. CREATE-MIA Summer School, June, 2013. (Oral presentation).

Paquette M., Diffusion Spectrum Imaging Optimization, CREATE-MIA Summer School, June, 2013. (Oral presentation).

Piuze E., Moving Frames for Heart Fiber Geometry, CREATE-MIA Summer School, June, 2013. (Oral presentation).

Yao Z.. Spatial specificity of cortical blood-oxygenation and blood-volume signals: implications for high-resolution fMRI and fMRI-based decoding. CREATE-MIA Summer School, June, 2013. (Oral presentation).

2012

Last modified Nov 27, 2013

De Nigris D., Collins D. L., Arbel T., Multi-Modal Image Registration Based on Gradient Orientations of Minimal Uncertainty. IEEE Transactions on Medical Imaging, Vol. 31, No. 12, pp. 2343-2354, Dec. 2012.

Venkateswaran A., Reed S., Yao Z., Kropf P., Villeneuve M., Shmuel A. The effect of continuous theta-burst rTMS on locally measured cortical response to visual stimuli Society for Neuroscience, 2012.

Shmuel A., Lu V., Yao ZSpatial specificity of the hemodynamic response relative to neurophysiological activity. International Organization for Human Brain Mapping 2012, Beijing, China (workshop presentation).

Neupane S., Venkateswaran A., Yao Z., Kropf P., Villeneuve M., Shmuel A. The effect of high-frequency (20 Hz) rTMS on locally measured cortical response to visual stimuli Society for Neuroscience, 2012.

Ghaderi H., Campbell J., Alsubaie F., Sadikot A.F., and Pike G.B. Comparing target localization methods for deep brain surgery: Combination of functional and diffusion MRI versus a generic atlasMICCAI- Deep brain stimulation Workshop 2012, Nice, France

Ghaderi H., Sadikot A., Campbell J., and Pike G.B. Automatic, rapid, non- invasive and precise localization of thalamic nuclei for deep brain stimulation (DBS) surgery using a combination of diffusion and functional MRI. In Proceedings of the International Society for Magnetic Resonance in Medicine: 20th Scientific Meeting and Exhibition, page 652, 2012. (Oral presentation at ISMRM Conference, Melbourne, Australia)